Three-Way Split of datasets every Data Scientist should master

September 19, 2025

A data scientist managing data

Introduction: The Foundation of Machine Learning Success

In the world of data science, the difference between a successful machine learning model and a failed one often lies in how you split your data. Test and training sets form the backbone of every reliable machine learning project, yet many beginners struggle to understand their proper implementation and importance.

Test and training sets are fundamental divisions of your dataset used to build and evaluate machine learning models. The training set teaches your model patterns in the data, while the test set provides an unbiased evaluation of your model’s performance on unseen data. A validation set, when used, helps fine-tune model parameters without contaminating the test results.

The three pillars of dataset

The three pillars of effective machine learning evaluation rest on distinct dataset purposes:

  • Training sets enable model learning,
  • Validation sets facilitate hyperparameter optimization,
  • Test sets provide final performance assessment.
    Each serves a unique role in the model development lifecycle, and understanding their interplay is crucial for data science success.

1. The Training Set: Where Your Model Learns

The training set represents the foundation where your machine learning algorithm discovers patterns, relationships, and structures within your data. This subset contains both input features and target variables, allowing supervised learning algorithms to establish connections between predictors and outcomes.

According to research published on Medium, Training data for Machine Learning (ML) is a key input to algorithm that comprehend from such data and memorize the information for future prediction.” This emphasizes how crucial quality training data becomes for model success.

Data quality directly impacts model performance, requiring careful attention to missing values, outliers, and inconsistencies. Feature selection and engineering during the training phase can significantly enhance model capabilities, while proper preprocessing ensures algorithms can effectively process the information.

The training set should represent the full diversity of scenarios your model will encounter in production. Insufficient representation leads to biased models that fail when confronted with edge cases or unusual patterns not present during training.

2. The Validation Set: Fine-Tuning for Optimal Performance

The validation set serves as your model’s practice arena, where hyperparameter tuning and model selection occur without compromising the integrity of your final evaluation. This intermediate dataset allows you to experiment with different configurations while maintaining an unbiased test set for ultimate performance assessment.

Hyperparameter tuning represents one of the validation set’s primary functions. Learning rates, regularization parameters, tree depths, and other algorithmic settings require optimization through systematic experimentation. The validation set provides feedback on these adjustments without revealing test set information.

Preventing overfitting becomes another critical validation set responsibility. By monitoring validation performance during training, you can identify when your model begins memorizing training data rather than learning generalizable patterns. Early stopping techniques rely on validation set performance to halt training at optimal points.

3. The Test Set: Unveiling True Performance

The test set represents your model’s final examination, providing an unbiased assessment of performance on completely unseen data. This dataset remains untouched throughout the entire development process, ensuring honest evaluation of your model’s real-world capabilities.

Unbiased evaluation requires strict discipline in test set usage. Any information leakage from the test set during development compromises the validity of your final results. The test set should only be used once, after all development decisions are finalized.

The timing of test set usage marks the final step in model development. After training completion, hyperparameter optimization, and validation-based model selection, the test set reveals whether your approach will succeed in production environments.

 

Check out our article : Understanding Test and Training Set in Machine Learning

 

Data Preprocessing: Preparing Your Data after Splitting

Data preprocessing forms the essential foundation of an effective data splitting. Raw datasets typically contain inconsistencies, missing values, and formatting issues that can severely impact model performance if not addressed properly.

Common preprocessing techniques include data cleaning to handle missing values and outliers that could skew model learning. Normalization and scaling bring different features to comparable ranges, preventing variables with larger scales from dominating the learning process. Feature engineering creates new variables from existing ones, potentially uncovering hidden patterns that improve model performance.

The sequence of preprocessing operations matters significantly. Applying certain preprocessing steps before data splitting can introduce data leakage, where information from test sets inadvertently influences training.

Always split your data first, then apply preprocessing techniques separately to each subset to maintain proper isolation.

Best Data preprocessing and splitting practices

Data Splitting Strategies: Choosing the Right Approach

  • The Basic Train-Test Split

The fundamental train-test split provides the simplest approach to data division, typically allocating 70-80% of data for training and 20-30% for testing. Scikit-learn’s `train_test_split` function offers convenient implementation with options for stratification and random state control.

Implementation involves importing the function, specifying your features and target variables, and setting the test size parameter. The random state parameter ensures reproducible results across different runs, while stratification maintains class proportions in classification problems.

However, basic splitting has limitations. Without a validation set, hyperparameter tuning must occur on the training set, potentially leading to overfitting. Additionally, single splits may not provide robust performance estimates, especially with smaller datasets.

  • Adding a Validation Set

The three-way split (Train-Validation-Test) addresses basic splitting limitations by introducing a dedicated validation set. Common ratios include 60-20-20 or 70-15-15 for training, validation, and test sets respectively, though optimal proportions depend on dataset size and complexity.

Creating this split typically involves two sequential applications of `train_test_split`, first separating the test set, then dividing the remaining data into training and validation portions. This approach maintains proper isolation while providing dedicated datasets for each development phase.

  • Advanced Splitting Techniques

Stratified splitting maintains class proportions across all dataset splits, proving especially valuable for imbalanced classification problems. This technique ensures each subset contains representative samples from all classes, preventing scenarios where rare classes might be entirely absent from training or test sets.

K-fold cross-validation provides robust model evaluation by creating multiple train-test splits. The dataset divides into k equal portions, with each fold serving as a test set while the remaining k-1 folds form the training set. This approach provides more reliable performance estimates than single splits.

Nested cross-validation combines hyperparameter tuning with robust evaluation. An outer cross-validation loop provides performance estimates, while inner loops handle hyperparameter optimization within each fold. This technique prevents optimistic bias that can occur when using the same data for both model selection and evaluation.

Time-based splitting becomes essential for temporal data where chronological order matters. Traditional random splitting can introduce future information into training sets, creating unrealistic performance estimates. Time-based splits maintain temporal sequence, using earlier data for training and later data for testing.

 

Common Mistakes with Dataset splitting

 

A data scientist strugling with manageing the data
  • Using the test set for hyperparameter tuning

Using the test set for hyperparameter tuning represents a fundamental error that invalidates your performance estimates. The test set must remain completely isolated until final evaluation to ensure unbiased results.

  • Data leakage

Data leakage represents one of the most dangerous pitfalls in machine learning, occurring when information from the future or test sets inadvertently influences model training. According to IBM’s research, “Data leakage in machine learning occurs when a model uses information during training that wouldn’t be available at the time of prediction.”

Common leakage sources include using future data in training, applying preprocessing before splitting, and target leakage where features contain information directly derived from the target variable. These issues can create artificially inflated performance metrics that don’t translate to real-world success.

Ignoring data leakage can create models that appear successful during development but fail in production. Careful attention to preprocessing order and feature engineering helps prevent these issues.

  • Imbalanced datasets

Failing to address imbalanced datasets leads to models that perform well on common cases but miss critical rare events. Stratified sampling and appropriate evaluation metrics help mitigate these problems.

  • Non-representative data

Using non-representative data that doesn’t reflect real-world conditions creates models that fail during deployment. Ensuring your datasets capture the full range of expected scenarios improves model robustness.

 

Strategies to handle imbalanced Datasets

 

Dataset management
  • Oversampling and undersampling

Imbalanced datasets present unique challenges where minority classes may be underrepresented in training sets, leading to biased models that perform poorly on rare but important cases. Standard accuracy metrics can be misleading when class distributions are skewed.

Oversampling techniques like SMOTE create synthetic minority class samples to balance training data, while undersampling reduces majority class representation. Both approaches aim to provide more balanced learning opportunities, though each has trade-offs in terms of information loss or potential overfitting.

Alternative evaluation metrics become crucial for imbalanced problems. Precision, recall, F1-score, and AUC-ROC provide more nuanced performance assessment than simple accuracy, revealing how well models handle minority classes that may be business-critical.

  • Choosing the Right Splitting Ratios

Dataset size significantly influences optimal splitting strategies. Small datasets require techniques that maximize data utilization, such as cross-validation or leave-one-out validation, while large datasets can afford traditional splitting approaches without performance concerns.

For small datasets, consider using larger training proportions (80-90%) with cross-validation for evaluation, or implement stratified sampling to ensure adequate representation across all splits. Large datasets allow for more conservative approaches with dedicated validation and test sets.

Rules of thumb for splitting ratios include 70-15-15 for medium datasets, 80-10-10 for larger datasets, and 60-20-20 when extensive hyperparameter tuning is required. However, these guidelines should be adjusted based on specific project requirements and data characteristics.

  • Preventing data leakage

Preventing data leakage requires strict adherence to best practices :

  • Always split data before preprocessing,
  • Ensure temporal order in time series problems,
  • Examine feature engineering for potential target information.
  • Regular audits of your data pipeline can help identify subtle leakage sources before they compromise your results.

 

Tools to streamline your data splitting

UbiAI platform interface for LLM evaluation,

Handling the division of datasets for machine learning workflows can often be a tedious task, particularly when preparing data for model fine-tuning. Platforms like UbiAI, which offer automated annotation and modeling tools, can simplify this process by efficiently generating train and test splits.

 

Conclusion: Best Practices for Data Splitting Success

Successful data splitting requires understanding each dataset’s unique purpose, choosing appropriate splitting strategies for your specific problem, preventing data leakage through careful pipeline design, and addressing dataset imbalances that could bias your results.

The future of data splitting continues evolving with emerging techniques for handling complex data types, automated splitting optimization, and improved methods for detecting and preventing data leakage. As noted by Geoffrey Moore, Without big data, you are blind and deaf and in the middle of a freeway. Proper data splitting ensures you can navigate this highway of information successfully, building models that truly generalize to real-world challenges and deliver consistent value in production environments.

Unlocking the Power of SLM Distillation for Higher Accuracy and Lower Cost​

How to make smaller models as intelligent as larger ones

Recording Date : March 7th, 2025

Unlock the True Potential of LLMs !

Harnessing AI Agents for Advanced Fraud Detection

How AI Agents Are Revolutionizing Fraud Detection

Recording Date : February 13th, 2025

Unlock the True Potential of LLMs !

Thank you for registering!

Check your email for the live demo details

see you on February 19th

While you’re here, discover how you can use UbiAI to fine-tune highly accurate and reliable AI models!

Thank you for registering!

Check your email for webinar details

see you on March 5th

While you’re here, discover how you can use UbiAI to fine-tune highly accurate and reliable AI models!

Fine Tuning LLMs on Your Own Dataset ​

Fine-Tuning Strategies and Practical Applications

Recording Date : January 15th, 2025

Unlock the True Potential of LLMs !